BtaEX6022024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010830 | LRP1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr5:56625132-56627547:-
Coord C1 exon
chr5:56627428-56627547
Coord A exon
chr5:56625516-56625644
Coord C2 exon
chr5:56625132-56625395
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTCGCCTTTTCCCGCCAGACT
3' ss Score
8.36
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AGCAACGAGGACAGTGTTCCCATCTGGGCTGCCAGCACCACTGTGTCCCCACACTCAACGGGCCCACCTGCTACTGCAACAACAGCTTTCAGCTACAGGCAGACGGCAAGACCTGCAAAG
Seq A exon
ACTTCGACGAGTGCTCGGTGTATGGCACCTGCAGCCAGCTGTGCACCAACACAGATGGTTCCTTCACGTGCGGCTGTGTGGAAGGGTACCTGCTGCAGCCAGACAACCGCTCCTGCAAGGCCAAGAATG
Seq C2 exon
AGCCGGTTGACCGGCCCCCTGTGCTGCTGATTGCCAACTCGCAGAACATCCTGGCCACGTACCTGAGTGGGGCCCAGGTTTCCACCATCACACCCACCAGCACACGGCAGACCACAGCCATGGACTTCAGCTACGCCAACGAGACGGTGTGCTGGGTGCATGTTGGCGACAGCGCTGCCCAGACACAGCTCAAGTGCGCCCGCATGCCCGGCCTGAAGGGCTTCGTGGATGAGTACACCATCAACATCTCCCTCAGCCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010830-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(92.7=92.7)
A:
PF146701=FXa_inhibition=WD(100=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGACAGTGTTCCCATCT
R:
GAAGTCCATGGCTGTGGTCTG
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]