MmuEX6051934 @ mm10
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127605409-127608065:-
Coord C1 exon
chr10:127607946-127608065
Coord A exon
chr10:127605786-127605914
Coord C2 exon
chr10:127605409-127605672
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTCTCTGGGCAGATT
3' ss Score
11.15
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGCTCCGAGCCAACTGTTCTCGAATGGGTTGTCAACACCATTGTGTACCTACACCCAGTGGGCCCACGTGCTACTGTAACAGCAGCTTCCAGCTGCAGGCAGATGGCAAGACGTGCAAAG
Seq A exon
ATTTTGACGAGTGTTCCGTGTATGGCACCTGCAGCCAGCTTTGCACCAACACAGATGGCTCCTTCACATGTGGCTGTGTTGAAGGCTACCTGCTGCAACCGGACAACCGCTCCTGCAAGGCCAAGAATG
Seq C2 exon
AGCCAGTAGATCGGCCGCCAGTGCTACTGATTGCCAACTCTCAGAACATCCTAGCTACGTACCTGAGTGGGGCCCAAGTGTCTACCATCACACCCACCAGCACCCGACAAACCACGGCCATGGACTTCAGTTATGCCAATGAGACCGTATGCTGGGTGCACGTTGGGGACAGTGCTGCCCAGACACAGCTCAAGTGTGCCCGGATGCCTGGCCTGAAGGGCTTTGTGGATGAGCATACCATCAACATCTCCCTCAGCCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=87.8)
A:
PF146701=FXa_inhibition=WD(100=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTAACAGCAGCTTCCAGC
R:
CACACTTGAGCTGTGTCTGGG
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types