DreEX6080782 @ danRer10
Exon Skipping
Gene
ENSDARG00000029146 | lrp1ab
Description
low density lipoprotein receptor-related protein 1Ab [Source:ZFIN;Acc:ZDB-GENE-030131-7126]
Coordinates
chr23:25665430-25666462:-
Coord C1 exon
chr23:25666343-25666462
Coord A exon
chr23:25666097-25666225
Coord C2 exon
chr23:25665430-25665684
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGAGGCTTTCTCTACTTCAGACT
3' ss Score
7.13
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
AGCTTGCTAGTAAATGCTCAATCATGGACTGCCAGTACAACTGTTCGGTGACTTTGTCCGGTCCAAAGTGCTACTGCAAGAATGGCTATGAAGTGGGAGAAGATGGAAAGACATGCAAAG
Seq A exon
ACTTTAACGAATGTGCCGTGTACGGGACTTGCAGTCAGACCTGCACAAACTCAGAGGGCTCCTACACCTGCAGCTGTGTGGAGGGTTACCTGCCGCAACTGGACAACCGCTCATGCAAGGCCAAGAATG
Seq C2 exon
ACCCAGTGGATCGGCTCCCGTTCCTCCTTATAGCCAACTCCCAAAACATCCAAGCCACCTCTCTGAGTGGAGCAAACCCTATTACCATCAACGACAAACAGACCACCACAATGGACTTCATCTACGCCCAGGAGACCGTGTGCTGGATCCACATGGGCGACTCTCCCACTGCCTCGCAACTCAAGTGTGCCAAGTTTCCCAATGCCAAGAGCTTTACGGAGGAGAAGACCATTAACATCTCCCTCAGCCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029146-'3-9,'3-8,4-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=48.8)
A:
PF126622=cEGF=PD(12.5=6.8),PF146701=FXa_inhibition=WD(100=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGTCCAAAGTGCTACTG
R:
TTGGCACACTTGAGTTGCGAG
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]