DreEX6037462 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36546945-36559807:+
Coord C1 exon
chr9:36546945-36547058
Coord A exon
chr9:36551336-36551464
Coord C2 exon
chr9:36559550-36559807
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACTCTTCCTCTGTGTACAGATC
3' ss Score
9.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AACTCCTGTCAGCCTGTCACGAGCTGCACTGCCGTTACGGATGCATCATGACCAGAAACGGCACTTTCTGCTTCTGTGCCGATGGCTTCGAGGTGGGAGAGGATGGGCGTAGCT
Seq A exon
ATCATGATGAATGCGCCATGTACGGGACGTGCAGCCAGACCTGCATGAACACCTACGGGTCATTTCGCTGCAGCTGTACAGATGGGTTCAGCCTGCAGCCCAACAGACGCTCCTGCATCGCCAAACATG
Seq C2 exon
AGCCCGGCGAAAGTCCTGCCGCGCTGCTGATTGGAGGCTCGGATAATATTATAATCACAGCCCTAAATGGATCCCGCCTGCAAACCCTCAAACAACTGGACTCGAATGGGACTCATGGCTTGGATTTCAACCATAAAGAGGAATCAGTATGCTGGGTCACATCTTCAGAGTCCTCCGGACAACTGCGCTGCGCCAGAATGAAGAAAGCAAGTGGCTTCACTAAAGAGCAGGAAGTCAAAACCGTCCAGAATCTTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'0-1,'0-0,2-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PU(94.1=84.2)
A:
PF146701=FXa_inhibition=PD(0.1=0.0),PF146701=FXa_inhibition=WD(100=79.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCTTCTGTGCCGATGG
R:
GCTTTCTTCATTCTGGCGCAG
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]