DreEX6098771 @ danRer10
Exon Skipping
Gene
ENSDARG00000071381 | si:dkey-78l4.11
Description
si:dkey-78l4.11 [Source:ZFIN;Acc:ZDB-GENE-060503-269]
Coordinates
chr22:19479461-19480165:-
Coord C1 exon
chr22:19480021-19480165
Coord A exon
chr22:19479799-19479931
Coord C2 exon
chr22:19479461-19479712
Length
133 bp
Sequences
Splice sites
3' ss Seq
GATTTTGTCTTTTTCAACAGAGG
3' ss Score
8.93
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
CTTATGTGCATATAACGGACGGCAGGGAGGCAAAACCTCACTCCAGACCTTACATGGTTTCTGTTCAGAAGAAATGTCAACATATCTGTGGTGGATTTCTGATATCTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGAACCA
Seq A exon
AGGTGACACTCTGAAAATTGTGGTTGGTGCCCATAACTTGGCTGACAGTAAGAGTTTGATCCATTTTAAAGTGAAATCCTACATCAAGCATCCAGGCTACGCATTGTTTCAAAATGACATCATGCTTTTGAAG
Seq C2 exon
CTACAAGAGAAAGTCAAACTAAACAAAAACATTAGACTGATATCATTACCAAAGGATGGAAAAGATGCTAAAGCAGATACTATCTGCAGTGTGGCTGGTTGGGGGGATCTATGGAATAATGGCCCAGTGAGTGACCGTCTAATGGAAGCTAACACAAGTATAGTGAGCGATGCAGAGTGTGAACGCAGATGGGGATCTGTTTACAAGGACTCAAAGATGATGTGTGTATATGGTCATGGTGGATCCTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071381-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=87.8)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PU(64.8=98.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCATATAACGGACGGCAG
R:
CAACCAGCCACACTGCAGATA
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]