DreEX6099206 @ danRer10
Exon Skipping
Gene
ENSDARG00000104205 | cfhl3
Description
complement factor H like 3 [Source:ZFIN;Acc:ZDB-GENE-050208-423]
Coordinates
chr22:23745264-23745971:-
Coord C1 exon
chr22:23745789-23745971
Coord A exon
chr22:23745536-23745709
Coord C2 exon
chr22:23745264-23745437
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACATATCAATCTTGTTTCAGAGA
3' ss Score
7.75
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
TAACCTGTCAGCTTGATATAACTGAAACTGGAGTGATAAAACCCATTCCAGAGGGGAAAACCGTTTTCAAAGCTGGAGAAAGTGTGAGACTTATCTGCTCTGACATAAACTCACAGTTTTTCAGACAGGAAACATTTACATGCACAAATAATGGGAAGTGGGATCATAAACCAACCTGTAAAG
Seq A exon
AGATTAAATGCGAAGTTCCACATGGCCAGAACGTGTATATCCCGAATTTTTATTTCACCGGAGATCTACTGCTTGGAGCAAAAAAATCCTACAGTTGTGATACTGGATACCGTACAATGTCAGAAGAAGCAACATGCACACGAGATGGATGGTCACCAAAACCACTGTGTGCTG
Seq C2 exon
AAATGATGTGTGACCCACCAAGACTCCCAAATGCAGATATTGTTGGGGGCCAGAAACGAAACTACAGAATCTCTTCAACAATCGAGTATAAATGTCGTCCAGGATTTGAACCAGAAGAGCTTGTCCGAATCACCTGTGATTTCCAGGGCCAATGGACAGACATACAGCAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104205-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.5)
A:
PF0008415=Sushi=WD(100=93.2)
C2:
PF0008415=Sushi=WD(100=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGGGGAAAACCGTTTT
R:
TGGTTCAAATCCTGGACGACA
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]