DreEX6099207 @ danRer10
Exon Skipping
Gene
ENSDARG00000104205 | cfhl3
Description
complement factor H like 3 [Source:ZFIN;Acc:ZDB-GENE-050208-423]
Coordinates
chr22:23744981-23745709:-
Coord C1 exon
chr22:23745536-23745709
Coord A exon
chr22:23745261-23745437
Coord C2 exon
chr22:23744981-23745172
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCATCCCTGTTGTTTTCTAGAAA
3' ss Score
9.16
5' ss Seq
GTGGAAAGT
5' ss Score
2.17
Exon sequences
Seq C1 exon
AGATTAAATGCGAAGTTCCACATGGCCAGAACGTGTATATCCCGAATTTTTATTTCACCGGAGATCTACTGCTTGGAGCAAAAAAATCCTACAGTTGTGATACTGGATACCGTACAATGTCAGAAGAAGCAACATGCACACGAGATGGATGGTCACCAAAACCACTGTGTGCTG
Seq A exon
AAATGATGTGTGACCCACCAAGACTCCCAAATGCAGATATTGTTGGGGGCCAGAAACGAAACTACAGAATCTCTTCAACAATCGAGTATAAATGTCGTCCAGGATTTGAACCAGAAGAGCTTGTCCGAATCACCTGTGATTTCCAGGGCCAATGGACAGACATACAGCAATGCAGTG
Seq C2 exon
ATGGTACCTGTCAGGAGCAAGAACTCAAAAAAGTAAAAATTTTGTTTGGATATCCCACCTTCACTTCTCCTTATGAACCTGGACATGTTTTAGTTTTTCAATGCACAGATGACAACATGAGGTTTTACGGTCACCGTGCAATTGAGTGCCAGCCAGATGGGAAGTGGAACTACCCATATCCACAATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104205-'10-7,'10-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.2)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=87.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAGATCTACTGCTTGGA
R:
CGGTGACCGTAAAACCTCATGT
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]