DreEX6101039 @ danRer10
Exon Skipping
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8261569-8264749:+
Coord C1 exon
chr25:8261569-8263330
Coord A exon
chr25:8263703-8263837
Coord C2 exon
chr25:8264502-8264749
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACCAAACCCATGTTATGAATGTA
3' ss Score
-7.18
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AACTAGTACAACTTCTGGCACAACTAGTTCAACATATTCAACCACTAATAGCACTACAACTCCTCTGACACTATCTACAACATCAGGAATACCATCTACAACTAGTATAACTCCTGGCACAACTAGTTCCATATTTACAACAACTTATAGTACAAAAACTCATCTGACACCATCTACAACATCAGAAATACAATCTACAACTAGTACAACTCCTGGTACAACTAGTTCAACATATACAACCACTTATAGCACTATAACTCCTCTGATGCCATCTACAACATCAGAAATCTTATCTACAACTAGTACAACTCCTGGCACAACTACTTCAACTTTTAGAACTACAACTCATCTGACACCATCAACAACATCTAAAATACCATCTAAATCTAGTACAACTCTTGGAACACCAACTTCAACATTTACTACCACATTCATTACTACTACTCCACTGACACCATCTACAACATCGGAAATGTCATCTACAACTTCTAGCCGTACAG
Seq A exon
GTATAAACATAAATGGAAGTTTCATCCCTGTTCAACGGGATTGTCTTCCACCGCAAAACATCACCTGTGAAAATCACCAGCCAAGCGTGCTGCTAGAGGATAAGCACGAATGCTGCCCTTATTACGTCTGTGATT
Seq C2 exon
GCTTTTGCCAAGGCTGGGGTGACTCCCATTACATCACATTTGATGGACTCTATTACAATTACCAAGGAAACTGCACTTATATTTTAATGAAGGAAATTAGCCCTCAATTCAATTTAGCAATCTACATTGAGAATGTCTACTGTGACCCTGCTGAGAATGTATCCTGTCCCAGATCCCTTATTGTGTCTTACAACAAACAAAACATTACACTTAGAAGTCACAGGCTAATGGGAGGAGCAAATCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=0.814 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(51.6=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGAACACCAACTTCAACA
R:
TCAGCAGGGTCACAGTAGACA
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]