HsaEX7005753 @ hg38
Exon Skipping
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1192783-1194360:+
Coord C1 exon
chr11:1192783-1192982
Coord A exon
chr11:1193485-1193659
Coord C2 exon
chr11:1194110-1194360
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGGTCTCTGTGCTTCTGCAGAAA
3' ss Score
8.4
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GATCCACCATATACCGCCACAGAGACCTCGCTGGCCATTGCTATTATGCCCTGTGTAGCCAGGACTGCCAAGTGGTCAGAGGGGTTGACAGTGACTGTCCGTCCACCACGCTGCCTCCTGCCCCAGCCACGTCCCCTTCAATATCCACCTCCGAGCCCGTCACTGAGCTGGGATGCCCAAATGCGGTTCCCCCCAGAAAG
Seq A exon
AAAGGTGAGACCTGGGCCACACCCAACTGCTCCGAGGCCACCTGTGAGGGCAACAACGTCATCTCCCTGCGCCCGCGCACGTGCCCGAGGGTGGAGAAGCCCACTTGTGCCAACGGCTACCCGGCTGTGAAGGTGGCTGACCAAGATGGCTGCTGCCATCACTACCAGTGCCAGT
Seq C2 exon
GTGTGTGCAGCGGCTGGGGTGACCCCCACTACATCACCTTCGACGGCACCTACTACACCTTCCTGGACAACTGCACGTACGTGCTGGTGCAGCAGATTGTGCCCGTGTATGGCCACTTCCGCGTGCTCGTCGACAACTACTTCTGCGGTGCGGAGGACGGGCTCTCCTGCCCGAGGTCCATCATCCTGGAGTACCACCAGGACCGCGTGGTGCTGACCCGCAAGCCAGTCCACGGGGTGATGACAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182-'32-42,'32-40,33-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGTCAGAGGGGTTGACA
R:
CATACACGGGCACAATCTGCT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains