MmuEX6015371 @ mm9
Exon Skipping
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:148996942-148998379:+
Coord C1 exon
chr7:148996942-148997135
Coord A exon
chr7:148997588-148997762
Coord C2 exon
chr7:148998129-148998379
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGTTGGCTTTGTTTCTGCAGAGA
3' ss Score
7.57
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GATCCATCATCTACAACCAGACAGACCTTGATGGCCACTGTTACTATGCGATGTGTAGCCAGGATTGTCAGGTGGTCAAGAGGGTTAGTCAAGACTGCCCCTCCACCATGCCACCCCCTGCGACAACTCTATCTACATCTACCACGCCACCTGTCACTGGGCGGGATCGGTGCAATGTGTTTCCTCCAAGACTG
Seq A exon
AGAGGAGAGACCTGGCCAATGCCGAATTGTTCCCAAGCCACCTGTGAGGGCAACAATGTCATCTCCTTGAGCCCACGCCAGTGCCCAGAGCTGAATGAACCATCTTGTGCCAATGGTTACCCACCTCTGAAGGTGGATGACCAGGATGGTTGCTGCCAGCACTACCAGTGCCAAT
Seq C2 exon
GTGTTTGCAGCGGGTGGGGTGATCCCCACTACATCACATTTGATGGCACCTACTACACTTTCCTGGATAACTGCACATACGTGCTGGTGCAGCAGATCGTGCCCGTGTTTGGATACTTCCGTGTGCTCATTGACAACTACTACTGTGACGTGGGAGACAGCGTCTCCTGCCCACAGTCCATCATTGTGGAGTACCACCAGGACCGTGTGGTGCTGACCCGCAGGCCAGTTAGCGGGGTCATGACCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGGTGGTCAAGAGGGTT
R:
GTATCCAAACACGGGCACGAT
Band lengths:
245-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: