DreEX6008682 @ danRer10
Exon Skipping
Gene
ENSDARG00000104914 | muc5f
Description
mucin 5f [Source:ZFIN;Acc:ZDB-GENE-110411-240]
Coordinates
chr7:72101704-72102752:-
Coord C1 exon
chr7:72102672-72102752
Coord A exon
chr7:72102047-72102218
Coord C2 exon
chr7:72101704-72101948
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTACATTCTTTCCCCCCCAGAAT
3' ss Score
10.31
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CACAGTGCAGTTGTCACCCCACCAAGCTTGCCAGCTGTCACAGTTTCATCAGGAGGTCACATCACTGCACGTCATGACTGT
Seq A exon
AATGGTGAATCTGTCAAAGTGGGAAATTGCCAAATCGGGACATGCAATAATGGTTATATTCAGTATAAAGCGGTAGACTGTGATCCAGTACAGTACCCTGTGTGTGAAAACAAATTTTCACCGCTGAACATTTCTGATGAATCAGGATGCTGTTTTAAACACGAGTGCCAAT
Seq C2 exon
GTATTTGCAATGGCTTTCGTAACCTGCATTACATCACATTCGATGGAATATATTACCCATTTCAAGGAAACTCCTCTCGAGTGCTTGTGCAAGAAATTAAACCGAAGTATAATTTTAGTGTTGTAGTTGATAATATCTGTGACATTGAAGATGATCTCTCCTGCCCCAAGTCCCTGGTGGTTCATTATAAATCTTTTAAGATCTTCATGACTCAGAGAGTTTCTGCCGGAGCTGTTATGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104914-'0-1,'0-0,2-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.0=96.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCACCCCACCAAGCTTG
R:
GACTTGGGGCAGGAGAGATCA
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]