RnoEX6005672 @ rn6
Exon Skipping
Gene
ENSRNOG00000058420 | AABR07006033.1
Description
NA
Coordinates
chr1:214748510-214749890:+
Coord C1 exon
chr1:214748510-214748638
Coord A exon
chr1:214749104-214749278
Coord C2 exon
chr1:214749640-214749890
Length
175 bp
Sequences
Splice sites
3' ss Seq
AACTGGCTTTGTTTCTGCAGAAA
3' ss Score
8.63
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
TTGTCAGGTGTCAAAGGGGTTAGTCAGGACTGCCCCTCCACCATGCCACCCCGTACACCAACTCTATCCACATCTACCGCCCCACCTGTCACTGAGCGGGATTGGTGCAATGTGTTTCCTCCAAGACTG
Seq A exon
AAAGGGGAGACCTGGCCCATGCCTAATTGTTCCCAAGCCACATGTGAGGGCAACAATGTTGTCTCTTTGAGCCCACGCCAGTGTCCAGAGGTGAAGGAGCCATCTTGTGCCAATGGCTACCCACCTCTGAAGGTGGATGACCAGGACGGTTGCTGCCAGCACTACCAGTGCCAGT
Seq C2 exon
GTGTTTGCAGCGGCTGGGGTGACCCCCACTACATCACATTTGACGGCACCTACTACACTTTTCTGGACAATTGCACATACGTGCTGGTGCAGCAGATTGTGCCTGTGTTTGGAGACTTCCGTGTGCTCATTGACAACTACTACTGTGACCTGGGAGACAGTGTTTCCTGCCCACAGTCCATCATTGTCGAGTACCACCAGGACCGTGTGGTGCTGACCCGCAGGCCGGTTCACGGGGTCATGACCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058420-'8-8,'8-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCGTACACCAACTCTA
R:
AACACTGTCTCCCAGGTCACA
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]