BtaEX6104537 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X750]
Coordinates
chr29:51439742-51441210:-
Coord C1 exon
chr29:51440945-51441210
Coord A exon
chr29:51440349-51440523
Coord C2 exon
chr29:51439742-51439992
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGCTTTCTCTGCTTCCACAGAAA
3' ss Score
8.66
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
CAGGATCCTTCATCTATCAAGCAACTGACCTATCGGGCCACTGCTATTATGCCTTTTGCAACCCGGACTGCCACGTGGTCAAGGGGACGGCCCCCACCTGTCCCACCAGCATGCCACCTCCCACACCTCCTGCCACCACGTCGGTCTCTCAACAAGTGTGCTCAAATGCAGTCCCCCCAGGAACGGTAACCTCGCCTCTCCTGCCCTTCTCAGGGACTCAGGGGGCCTGGGAAGGGACCCTCAGTGGTTTCCAACCAGAGAGTGTG
Seq A exon
AAAGGTGAAACCTGGCCCATGCCCAACTGCTCCGAGGCCACCTGCCAGGGCAATGGGGTCATCACGGTGAGCCCACGCCACTGTCCGAGGGTGCAGAAGCCCACCTGTGCCAACGGCTACCCCGCCGTGCAGGTGACTGACCATGACGGCTGCTGCTCACACTACCAGTGCCCGT
Seq C2 exon
GCGTGTGCAGCGGCTGGGGGGACCCACACTACATCACGTTCGACGGCACCTACTACACGTTCCTGGACAACTGCACATACGTGCTGGTGCAGCAGATCGTGCCGGTGTTCGGCCACTTCCGCGTGCTGGTCGAGAACTACTTCTGCGATGCAGAGGATGGGCTGTCCTGCCCACAGTCCATCATCGTTGAGTACCATGAGAACCGCGTCATGCTGACCCGCAAGCCCGTCCACGGGGTGATGACCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038262-'2-3,'2-2,4-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCTCAGTGGTTTCCAAC
R:
TGACGCGGTTCTCATGGTACT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]