HsaEX6000275 @ hg38
Exon Skipping
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1101223-1102664:+
Coord C1 exon
chr11:1101223-1101446
Coord A exon
chr11:1101756-1101930
Coord C2 exon
chr11:1102417-1102664
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCCTTGCCTCCCGTCCCCAGGAG
3' ss Score
11.72
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGAGGAGGTGTACAACGGCACATACGGAGACACCTGTTATTTCGTCAACTGCTCACTGAGCTGTACGTTGGAGTTCTATAACTGGTCCTGCCCATCCACGCCCTCCCCAACACCCACGCCCTCCAAGTCGACGCCCACGCCTTCCAAGCCATCGTCCACGCCCTCCAAGCCGACGCCCGGCACCAAGCCCCCCGAGTGCCCAGACTTTGATCCTCCCAGACAG
Seq A exon
GAGAACGAGACTTGGTGGCTGTGCGACTGCTTCATGGCCACGTGCAAGTACAACAACACGGTGGAGATCGTGAAGGTGGAGTGTGAGCCGCCGCCCATGCCCACCTGCTCCAACGGCCTCCAACCCGTGCGCGTCGAGGACCCCGACGGCTGCTGCTGGCACTGGGAGTGCGACT
Seq C2 exon
GCTACTGCACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGACTCTACTACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGATCAGCCCCTCCGTGGACAACTTCGGAGTTTACATCGACAACTACCACTGCGATCCCAACGACAAGGTGTCCTGCCCCCGCACCCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGATCAAGACCGTGCATATGATGCCCATGCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-'40-38,'40-37,41-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGCCCAGACTTTGATCC
R:
CACGGTCTTGATCAGCACCTC
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains