MmuEX6015335 @ mm9
Exon Skipping
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148931348-148932770:+
Coord C1 exon
chr7:148931348-148931625
Coord A exon
chr7:148931877-148932051
Coord C2 exon
chr7:148932523-148932770
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCACACTATCTCTCCTGCAGGTT
3' ss Score
10.46
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGAACTGGTCTACAACAGTACCCATGGGGGCACCTGTTTCTATGTAAACTGCTCTCTGGACTGCCATCTCCAGTTCTTCAATTGGTCCTGTCCATCTACTCCCTCAACTCCTACACCCTCAACACCAACACCAACACCCTCCCAGACGACCACACCATCTACCACGTCTTCCAAGTCTACACCCTCTACACCCCAATCCACATCGCCCAAGTCGACACTCAGCACACCAACCAAAACCACCCCCTATGGGTGCCCAGATTTTGATCCTCCCAGACAG
Seq A exon
GTTAATGAGACCTGGTGGCTGTGTAACTGTACTATGGCTATTTGCAATCATGACAACGTAGTGGAGATTGTGCCGCTGAAGTGCGATCCCCCACCCATGCCCACCTGTGCCAATGGCCTCAAACCTGTGCGTGTTCCTGATGCTGATAACTGCTGCTGGCACTGGGAATGTGACT
Seq C2 exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTCTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTGGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGTGATGCCAATGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCGCCACGAGACCCAGGAAGTACAGATCAAGACCGTGAGGATGATGCCCATTGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.3=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAACACCAACACCCTC
R:
TCTCCTCCACCAGCACATAGG
Band lengths:
253-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: