HsaEX6000275 @ hg19
Exon Skipping
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1095131-1096572:+
Coord C1 exon
chr11:1095131-1095354
Coord A exon
chr11:1095664-1095838
Coord C2 exon
chr11:1096325-1096572
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCCTTGCCTCCCGTCCCCAGGAG
3' ss Score
11.72
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGAGGAGGTGTACAACGGCACATACGGAGACACCTGTTATTTCGTCAACTGCTCACTGAGCTGTACGTTGGAGTTCTATAACTGGTCCTGCCCATCCACGCCCTCCCCAACACCCACGCCCTCCAAGTCGACGCCCACGCCTTCCAAGCCATCGTCCACGCCCTCCAAGCCGACGCCCGGCACCAAGCCCCCCGAGTGCCCAGACTTTGATCCTCCCAGACAG
Seq A exon
GAGAACGAGACTTGGTGGCTGTGCGACTGCTTCATGGCCACGTGCAAGTACAACAACACGGTGGAGATCGTGAAGGTGGAGTGTGAGCCGCCGCCCATGCCCACCTGCTCCAACGGCCTCCAACCCGTGCGCGTCGAGGACCCCGACGGCTGCTGCTGGCACTGGGAGTGCGACT
Seq C2 exon
GCTACTGCACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGACTCTACTACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGATCAGCCCCTCCGTGGACAACTTCGGAGTTTACATCGACAACTACCACTGCGATCCCAACGACAAGGTGTCCTGTCCCCGCACCCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGATCAAGACCGTGCATATGATGCCCATGCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(52.3=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGCCCAGACTTTGATCC
R:
CACGGTCTTGATCAGCACCTC
Band lengths:
255-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)