RnoEX0001400 @ rn6
Exon Skipping
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214683830-214685258:+
Coord C1 exon
chr1:214683830-214684119
Coord A exon
chr1:214684371-214684496
Coord C2 exon
chr1:214685011-214685258
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGTACTATCTCTTCTGCAGGTC
3' ss Score
10.06
5' ss Seq
CCCGTGCGT
5' ss Score
6.27
Exon sequences
Seq C1 exon
GTGAAGTGGTCTACAACAGTACCTATGGGGACACCTGTTATTTTGTAAACTGCTCTGTGGACTGCCAACTCCAGGTCTTCAATTGGTCCTGTCCATCTACTCCCTCAACTCCCCCACCCTCAACACCAACAACACCAACATCCTCCCAGACAACCACACCCTCCACACCATCTACCACATCTTCGAAGTCTACACCCTCTACGCCCCAATCCACATCATCCAAGTCAACGCCCAGCACACCACCCAAAACCACCCTTCCTGGGTGCCTCGATTTTGATCCTCCCAGACAG
Seq A exon
GTCAATGAGACCTGGTGGCTGTGTAACTGTACCATGGCCATCTGCAAATATGACAACGTAGTGGAGATTGTGGAGCTGGAGTGCAACCCCCCACCCATGCCCACCTGTTCCAATGGCCTCAAACCC
Seq C2 exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTTTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTAGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGCGATGCCAACGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCACCATGAGACCCAGGAAGTGCTGATCAAGACTGTGCACATGATGCCCATTGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602-'48-51,'48-50,49-51
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.3=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTACACCCTCTACGCCC
R:
GCATCGCAGTGGTAGTTGTCA
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]