DreEX6101003 @ danRer10
Exon Skipping
Gene
ENSDARG00000104499 | MUC5B (2 of 3)
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr25:8161334-8162019:+
Coord C1 exon
chr25:8161334-8161416
Coord A exon
chr25:8161532-8161685
Coord C2 exon
chr25:8161781-8162019
Length
154 bp
Sequences
Splice sites
3' ss Seq
AATTGGTTTATTTATAACAGACA
3' ss Score
4.37
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TCAACCTACTTGATAAGTGTTATTCTGCTTATTGCAACTCATCTTGCTCTGTTGTACAACAGATTAATTTTGACAACAGCACG
Seq A exon
ACAGACGCATGCACTATCAAAACATGCAAAAATGGAACAGTCACATCAAATCATGTGCAATGTGACCCAGTTGTAGTTCCTAAATGTGTCAACGGCCTTGGACCTGTGAAGGTGTATTATAACAACCGGTGCTGCTATAAATATGAGTGTGACT
Seq C2 exon
GTTTGTGCAAGGCATATGGCGACCCTCATTATCGATCTTTTGATGGACAATATTATACTTTTCATGGAAACTGCACTTATGTGTTGATGGAAGAAATCATCCCAACGTACAATATCAGTGTTCATCTTAAGAACTATTATTGTGATGTTGTGAAACGTATTGCATGCACCCAGTATGCAATTGTTTATTACAACTCTTACAAAATCCTGCTGAACAGCACTGATGATAAAGTGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104499-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTAATTTTGACAACAGCACG
R:
CATCAGTGCTGTTCAGCAGGA
Band lengths:
250-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]