DreEX6101057 @ danRer10
Exon Skipping
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8317790-8320885:+
Coord C1 exon
chr25:8317790-8317909
Coord A exon
chr25:8319681-8319720
Coord C2 exon
chr25:8320768-8320885
Length
40 bp
Sequences
Splice sites
3' ss Seq
AGCTCTGTTTGACTTGACAGGGA
3' ss Score
6.15
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
Exon sequences
Seq C1 exon
GAGGGAGAGAGTTACAATTATAAATGTGAAAGTGTGACTTGTCAGCAAGTCAATGGGACGTACATAATAGAGAGGACCATACCAACCTGTCCCGAAATCAATCCAGATCAATGTGTGCCT
Seq A exon
GGAACACTGGGACTCGATGAAGATGGATGCTGCAACACCT
Seq C2 exon
GTGAACTCAAGAACTGTGTTCGTGTGAAGAACATGACAGATGTCACAGTGAATGACTGCAAGTCCATCAACCCCATTGAAGTCACATCCTGCAGTGGAAACTGCGACACAGAATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331-'52-55,'52-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACCAACCTGTCCCGAA
R:
CCACTGCAGGATGTGACTTCA
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]