GgaEX1001580 @ galGal3
Exon Skipping
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15958371-15960046:-
Coord C1 exon
chr5:15959918-15960046
Coord A exon
chr5:15959097-15959136
Coord C2 exon
chr5:15958371-15958494
Length
40 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTGCTTTCAATACAGGGG
3' ss Score
6.39
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTTGGAAAGAGTTATAAAGCACCATACGATAACTGTACTCAGTACACATGCACTGAATCTGGGGGCCAGTTCTCCTTGACTAGTACAGTAAAGGTCTGCCTACCATTTGAGGAGTCAAACTGTGTCCCA
Seq A exon
GGGACTGTTGATGTGACTTCAGATGGCTGTTGTAAGACAT
Seq C2 exon
GTATCGACCTGCCACATAAATGCAAACGCAGCATGAAAGAGCAGTACATTGTTCACAAGCACTGTAAGTCTGCTGCTCCGGTCCCAGTGCCCTTCTGCGAAGGGACGTGCAGTACCTATTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717-'46-47,'46-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCAGTTCTCCTTGACTA
R:
CGGAGCAGCAGACTTACAGTG
Band lengths:
148-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]