DreEX6101067 @ danRer10
Exon Skipping
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8309313-8310098:+
Coord C1 exon
chr25:8309313-8309487
Coord A exon
chr25:8309579-8309814
Coord C2 exon
chr25:8309915-8310098
Length
236 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCCTTGGTTTGAAAGGTA
3' ss Score
7.81
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATATGGAGTCCTGGATTGAAAACTGCAAAAACTACACGTGTAAAAATGGCAAGGTAACCTCAGTGCCTCTACAGTGTGACAAATCTGACAAGGTCATGCCTACATGTACCAATGGAATTAAAGCTAAGAAGGTGTCTTATAACAATGGCTGCTGCTCTAGATATGAATGCGAAT
Seq A exon
GTAAATGCAGTGGTTGGGGTGACCCACATTACCAAATGTTTGATGGAACATACTATGACTTCCAAGGAAATTGCACTTACGTCTTGTTCAAAGAAATCGTCCCAAGATATAACATCAGTGCCTATGTTAAAAACTACTTATGTGATCTTCAAAATAATCTTGCCTGCCCAGAGTATGTGATTGTGAACTACAAATCATATAGCATTAAGCTGACAAGCAACACCAAAGAGATTGAG
Seq C2 exon
GTCTATGTTAATGATGATTTGAAACAACTAACTTACGTCAATAACAACTTCTTCATCACCACCTCTGGCATTGGAGTCATTTTGAACATCACTGAAATCAATGTCGAGATTACTGTGAATCATCAAGGCTTTGTGATCAATCTCCCATTCTCCTACTTCAGTGGTAATACAGAGGGGCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(49.0=96.2)
C2:
PF0009420=VWD=FE(39.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGTAACCTCAGTGCCTC
R:
ACTGCCCCTCTGTATTACCACT
Band lengths:
307-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]