GgaEX1001599 @ galGal3
Exon Skipping
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15968254-15969467:-
Coord C1 exon
chr5:15969290-15969467
Coord A exon
chr5:15968845-15969095
Coord C2 exon
chr5:15968254-15968437
Length
251 bp
Sequences
Splice sites
3' ss Seq
ACTTGAAGTGTGTCTTCCAGGTA
3' ss Score
6.9
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
TTTAATGAATCATGGGACTTTGGAAACTGCCAGATTGCCACTTGCCTGGGAGAAGAAAATAATATTAAGCTGTCCAGCATCACTTGCCCTCCTCAGCAGCTGAAACTCTGTGTCAATGGTTTCCCATTCATGAAACACCATGATGAAACTGGTTGCTGTGAAGTCTTTGAGTGCCAAT
Seq A exon
GTATTTGCAGTGGGTGGGGAAATGAGCATTATGTGACTTTCGATGGAACCTATTATCACTTCAAAGAAAACTGCACATATGTCCTTGTGGAGTTAATTCAGCCCAGCTCTGAAAAGTTCTGGATTCACATAGACAACTACTACTGTGGTGCCGCCGATGGAGCGATTTGTTCAATGTCCCTACTCATTTTTCACTCCAATTCTCTTGTTATTCTGACACAAGCGAAGGAACATGGAAAAGGAACAAACTTG
Seq C2 exon
GTTTTGTTTAATGATAAGAAAGTTGTTCCAGACATTTCTAAGAATGGCATCAGGATAACCAGCTCTGGCCTTTACATTATAGTTGAAATACCTGAGTTAGAAGTTTATGTCTCTTACAGTCGACTTGCATTTTACATAAAACTCCCTTTTGGAAAGTATTATAACAATACCATGGGACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717-'32-32,'32-31,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.6=96.4)
C2:
PF0009420=VWD=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTTTGGAAACTGCCAG
R:
TGCAAGTCGACTGTAAGAGACA
Band lengths:
295-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]