GgaEX0009606 @ galGal3
Exon Skipping
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15967545-15969095:-
Coord C1 exon
chr5:15968845-15969095
Coord A exon
chr5:15968254-15968437
Coord C2 exon
chr5:15967545-15967737
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTCTCTTCTTTTTAGGTT
3' ss Score
12.74
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTATTTGCAGTGGGTGGGGAAATGAGCATTATGTGACTTTCGATGGAACCTATTATCACTTCAAAGAAAACTGCACATATGTCCTTGTGGAGTTAATTCAGCCCAGCTCTGAAAAGTTCTGGATTCACATAGACAACTACTACTGTGGTGCCGCCGATGGAGCGATTTGTTCAATGTCCCTACTCATTTTTCACTCCAATTCTCTTGTTATTCTGACACAAGCGAAGGAACATGGAAAAGGAACAAACTTG
Seq A exon
GTTTTGTTTAATGATAAGAAAGTTGTTCCAGACATTTCTAAGAATGGCATCAGGATAACCAGCTCTGGCCTTTACATTATAGTTGAAATACCTGAGTTAGAAGTTTATGTCTCTTACAGTCGACTTGCATTTTACATAAAACTCCCTTTTGGAAAGTATTATAACAATACCATGGGACTGTGTG
Seq C2 exon
GTACATGCACCAACCAGAAGTCTGATGATGCTAGGAAGAGGAATGGTGAGGTCACTGACTCCTTCAAAGAGATGGCATTGGATTGGAAAGCCCCGGTTTCTACCAACAGATACTGTAATCCAGGCATCTCAGAACCAGTTAAGATTGAAAATTATCAGCACTGTGAGCCTTCTGAGCTGTGTAAAATCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717-'33-33,'33-32,34-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.6=96.4)
A:
PF0009420=VWD=FE(38.1=100)
C2:
PF0009420=VWD=PD(10.0=24.6),PF087426=C8=PU(15.3=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTACTACTGTGGTGCCGC
R:
ACTGGTTCTGAGATGCCTGGA
Band lengths:
257-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]