GgaEX0009606 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NZY2]
Coordinates
chr5:14254059-14255609:-
Coord C1 exon
chr5:14255359-14255609
Coord A exon
chr5:14254768-14254951
Coord C2 exon
chr5:14254059-14254251
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTCTCTTCTTTTTAGGTT
3' ss Score
12.74
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTATTTGCAGTGGGTGGGGAAATGAGCATTATGTGACTTTCGATGGAACCTATTATCACTTCAAAGAAAACTGCACATATGTCCTTGTGGAGTTAATTCAGCCCAGCTCTGAAAAGTTCTGGATTCACATAGACAACTACTACTGTGGTGCCGCCGATGGAGCGATTTGTTCAATGTCCCTACTCATTTTTCACTCCAATTCTCTTGTTATTCTGACACAAGCGAAGGAACATGGAAAAGGAACAAACTTG
Seq A exon
GTTTTGTTTAATGATAAGAAAGTTGTTCCAGACATTTCTAAGAATGGCATCAGGATAACCAGCTCTGGCCTTTACATTATAGTTGAAATACCTGAGTTAGAAGTTTATGTCTCTTACAGTCGACTTGCATTTTACATAAAACTCCCTTTTGGAAAGTATTATAACAATACCATGGGACTGTGTG
Seq C2 exon
GTACATGCACCAACCAGAAGTCTGATGATGCTAGGAAGAGGAATGGTGAGGTCACTGACTCCTTCAAAGAGATGGCATTGGATTGGAAAGCCCCGGTTTCTACCAACAGATACTGTAATCCAGGCATCTCAGAACCAGTTAAGATTGAAAATTATCAGCACTGTGAGCCTTCTGAGCTGTGTAAAATCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717_MULTIEX1-27/28=26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.6=96.4)
A:
PF0009420=VWD=FE(38.1=100)
C2:
PF0009420=VWD=PD(10.0=24.6),PF087426=C8=PU(15.3=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTACTACTGTGGTGCCGC
R:
ACTGGTTCTGAGATGCCTGGA
Band lengths:
257-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]