HsaEX7005776 @ hg38
Exon Skipping
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1254092-1255266:+
Coord C1 exon
chr11:1254092-1254351
Coord A exon
chr11:1254694-1254880
Coord C2 exon
chr11:1255041-1255266
Length
187 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCTGGATTCCCCCAGATC
3' ss Score
7.58
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GCATCTGCAGCATGTGGGGCGGCTCCCACTATTCCACCTTTGACGGCACCTCTTACACCTTCCGGGGCAACTGCACCTATGTCCTCATGAGAGAGATCCATGCACGCTTTGGGAATCTCAGCCTCTACCTGGACAACCACTACTGCACGGCCTCTGCCACTGCCGCTGCCGCCCGCTGCCCCCGCGCCCTCAGCATCCACTACAAGTCCATGGATATCGTCCTCACTGTCACCATGGTGCATGGGAAGGAGGAGGGCCTG
Seq A exon
ATCCTGTTTGACCAAATTCCGGTGAGCAGCGGTTTCAGCAAGAACGGCGTGCTTGTGTCTGTGCTGGGGACCACCACCATGCGTGTGGACATTCCTGCCCTGGGCGTGAGCGTCACCTTCAATGGCCAAGTCTTCCAGGCCCGGCTGCCCTACAGCCTCTTCCACAACAACACCGAGGGCCAGTGCG
Seq C2 exon
GCACCTGCACCAACAACCAGAGGGACGACTGTCTCCAGCGGGACGGAACCACTGCCGCCAGTTGCAAGGACATGGCCAAGACGTGGCTGGTCCCCGACAGCAGAAAGGATGGCTGCTGGGCCCCGACTGGCACACCCCCCACTGCCAGCCCCGCAGCCCCGGTGTCTAGCACACCCACCCCCACCCCATGCCCACCACAGCCGCTCTGTGATCTGATGCTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.237
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(51.2=96.6)
A:
PF0009420=VWD=FE(37.8=100)
C2:
PF0009420=VWD=PD(9.8=21.1),PF087426=C8=PU(17.8=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCCATGCACGCTTTGG
R:
TCTTGGCCATGTCCTTGCAAC
Band lengths:
250-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains