MmuEX7004386 @ mm10
Exon Skipping
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:141866756-141867802:+
Coord C1 exon
chr7:141866756-141867012
Coord A exon
chr7:141867288-141867474
Coord C2 exon
chr7:141867577-141867802
Length
187 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTGGACATCCCTAGATT
3' ss Score
6.86
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCTTCTGCAGTGGATGGGGGCACTCACACTACCTGACCTTCGATGGCACCTCCTATACTTTCCTGGATAACTGTACCTCCGTGCTCATGAGAGAGATCCACCCTCGCCATGGTAACCTGAGCATCCTTGCCCACAGCTACTACTGTGGGGCTACCACAAATGTCACCTCCTGTCCCCGTGCCCTCAGTGTGTACTACAACTCCATGGAGATTATCCTTACCATCAGCACCACTGAGAGCGGGAAGGATGAGAGCCTG
Seq A exon
ATTATATGGGACCAAATGTGGATACGATCAGGCTTCAGTAAGAATGGTGTGACCGTGTCCTTGAGTGGGGCCACCACAATGAGTGTCAACATTTCCACCATTGGCACCATCATCACCTTTGATGGGAACATCTTCCAGATATGGTTGCCCTACAGATATTTCAGCAGCAATACTGAGGGCCAGTGTG
Seq C2 exon
GTACCTGCACAAACAGCCAGATAGACGACTGCCGCCGGCCTGATGGCACCATAGCTTCTGACTGCCAGGACATGGCCAAAGAATGGCTGGTGCCTGGGAACAGTAGCAGCAGCTGCTTAGCTCAGCCTAGCCCTCTCCCGAGCACCACTCCCCAGACCCCAGTGTCCAGCACACTGACCTCCACCCCATGCCCCTCTGCACCTCTCTGTGAGCTGATGCTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-'29-38,'29-35,35-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.9=96.5)
A:
PF0009420=VWD=FE(38.0=100)
C2:
PF0009420=VWD=PD(9.8=21.1),PF087426=C8=PU(17.6=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGTGCTCATGAGAGAGA
R:
TGTCCTGGCAGTCAGAAGCTA
Band lengths:
254-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types