RnoEX6005690 @ rn6
Exon Skipping
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214804392-214805432:+
Coord C1 exon
chr1:214804392-214804648
Coord A exon
chr1:214804922-214805108
Coord C2 exon
chr1:214805207-214805432
Length
187 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTGGACATCTCTAGATT
3' ss Score
6.74
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCTTCTGCAGTGGATGGGGGCACTCCCACTACCTGACATTCGATGGCACCTCCTATACTTTTGTGGACAACTGTACCTCAGTGCTCATGAGAGAGATCCACCCTCGCCATGGCAACCTGAGCATCCTTGCCCACAGCTACTACTGTGGGGCCACCACAAATGTCACCTTCTGTCCCCGCGCCCTCAGTGTGTACTACAACTCCATGGAGATTGTCCTCACCACCACCACCACCAACAGTGGGAAGGAAGAGAGCCTG
Seq A exon
ATTATATGGGACCAGATGTGGATAAGGTCGGGCTTCAGTAAGAATGGCGTGACCGTATCTTTGAGTGGGGCCACCACAATGAGTGTCAACATTTCCACCATTGGCGCCAGCATCACCTTTGATGGAAACATCTTCCAGATATGGTTGCCCTATAGATACTTCAGCAACAACACTGAGGGCCAGTGTG
Seq C2 exon
GTACCTGCACAAACAGTCAGACAGACGACTGCCGCCGGCCTGATGGCACCATAGCTTCCGACTGCCAGGACATGGCCAAAGACTGGCTGGTGCCGGGGAACAACAACAGCGACTGCTTAGCTCAACCCAGCCCTTCCCCCAGCACCACTTCCCAGCCCCCAATGTCCAGCACACTGACCTCCACCACATGCCCCTCTGCGCCTCTCTGTGAGCTGATGTTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.9=96.5)
A:
PF0009420=VWD=FE(38.0=100)
C2:
PF0009420=VWD=PD(9.8=21.1),PF087426=C8=PU(17.6=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGAGATCCACCCTCGC
R:
CCAGTCTTTGGCCATGTCCTG
Band lengths:
257-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]