MmuEX6015370 @ mm10
Exon Skipping
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141811683-141812750:+
Coord C1 exon
chr7:141811683-141811857
Coord A exon
chr7:141812224-141812474
Coord C2 exon
chr7:141812567-141812750
Length
251 bp
Sequences
Splice sites
3' ss Seq
AAGCTACCTGGCGCCCACAGGTG
3' ss Score
6.26
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
AGAGGAGAGACCTGGCCAATGCCGAATTGTTCCCAAGCCACCTGTGAGGGCAACAATGTCATCTCCTTGAGCCCACGCCAGTGCCCAGAGCTGAATGAACCATCTTGTGCCAATGGTTACCCACCTCTGAAGGTGGATGACCAGGATGGTTGCTGCCAGCACTACCAGTGCCAAT
Seq A exon
GTGTTTGCAGCGGGTGGGGTGATCCCCACTACATCACATTTGATGGCACCTACTACACTTTCCTGGATAACTGCACATACGTGCTGGTGCAGCAGATCGTGCCCGTGTTTGGATACTTCCGTGTGCTCATTGACAACTACTACTGTGACGTGGGAGACAGCGTCTCCTGCCCACAGTCCATCATTGTGGAGTACCACCAGGACCGTGTGGTGCTGACCCGCAGGCCAGTTAGCGGGGTCATGACCAACCAG
Seq C2 exon
ATCATCTTCAACAACAAAGTAGTCAGTCCTGGCTTCCAGCAGAATGGCATTGTCACCTCCCGTGTGGGTATCAAGATGTATGTTACCATCCAAGAGATTGGTGTCCGGGTCATGTTTTCAGGTCTCATCTTCTCCGTCGAGGTGCCTTTCAACTTGTTTGCCAACAACACAGAGGGCCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-'35-48,'35-38,38-48=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.6=96.4)
C2:
PF0009420=VWD=FE(38.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTGAGGGCAACAATGT
R:
AAGTTGAAAGGCACCTCGACG
Band lengths:
292-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types