RnoEX6005671 @ rn6
Exon Skipping
Gene
ENSRNOG00000058420 | AABR07006033.1
Description
NA
Coordinates
chr1:214749104-214750166:+
Coord C1 exon
chr1:214749104-214749278
Coord A exon
chr1:214749640-214749890
Coord C2 exon
chr1:214749983-214750166
Length
251 bp
Sequences
Splice sites
3' ss Seq
AAGCTACCCGGCACCCACAGGTG
3' ss Score
3.97
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AAAGGGGAGACCTGGCCCATGCCTAATTGTTCCCAAGCCACATGTGAGGGCAACAATGTTGTCTCTTTGAGCCCACGCCAGTGTCCAGAGGTGAAGGAGCCATCTTGTGCCAATGGCTACCCACCTCTGAAGGTGGATGACCAGGACGGTTGCTGCCAGCACTACCAGTGCCAGT
Seq A exon
GTGTTTGCAGCGGCTGGGGTGACCCCCACTACATCACATTTGACGGCACCTACTACACTTTTCTGGACAATTGCACATACGTGCTGGTGCAGCAGATTGTGCCTGTGTTTGGAGACTTCCGTGTGCTCATTGACAACTACTACTGTGACCTGGGAGACAGTGTTTCCTGCCCACAGTCCATCATTGTCGAGTACCACCAGGACCGTGTGGTGCTGACCCGCAGGCCGGTTCACGGGGTCATGACCAACCAG
Seq C2 exon
ATCATCTTCAACAACAAGGTCGTGAGTCCTGGCTTCCAGCAGAATGGCATTATCATCTCCCGTGTGGGTATCAAGATGTATGTCACCATCCAAGAGATTGGTGTCCAGGTCATGTTTTCAGGCCTCATCTTCTCAGTTGAGGTGCCCTTCAACTTGTTTGCCAACAACACGGAGGGCCAATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058420-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.6=96.4)
C2:
PF0009420=VWD=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCAAGCCACATGTGAGG
R:
GCAAACAAGTTGAAGGGCACC
Band lengths:
308-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]