DreEX6101038 @ danRer10
Exon Skipping
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8256983-8265036:+
Coord C1 exon
chr25:8256983-8263837
Coord A exon
chr25:8264502-8264749
Coord C2 exon
chr25:8264853-8265036
Length
248 bp
Sequences
Splice sites
3' ss Seq
ACACACTCTACTATTCATAGGCT
3' ss Score
4.67
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CAAATCTACTCTAACTGTTGTTACTGGAAACACCAAATCTACCACTTATGCATCTGCAAAACCTCAAATTGACAATACCACAACCTCACTATTTACATCTACAACTACACCTGTGTCTACAGAAATAACTTCTTCAAATAGTACAACTTCTGGCACAACACCTACTTCAACATTTACCCCCACCTCCACTTCTACAACTCCTATGACGCTATCTACAACATCAGAAATAGCAACTACAACTATTACAACTCCTGGTACAACACCTACTTCCAGAGCCACAACCACTAGATCTCCTATAACTACACTACTTACAACAACACCTTTTATACCTCCAACACCACCACAACCAAACCCATGTTATGAATGTATAAACATAAATGGAAGTTTCATCCCTGTTCAACGGGATTGTCTTCCACCGCAAAACATCACCTGTGAAAATCACCAGCCAAGCGTGCTGCTAGAGGATAAGCACGAATGCTGCCCTTATTACGTCTGTGATT
Seq A exon
GCTTTTGCCAAGGCTGGGGTGACTCCCATTACATCACATTTGATGGACTCTATTACAATTACCAAGGAAACTGCACTTATATTTTAATGAAGGAAATTAGCCCTCAATTCAATTTAGCAATCTACATTGAGAATGTCTACTGTGACCCTGCTGAGAATGTATCCTGTCCCAGATCCCTTATTGTGTCTTACAACAAACAAAACATTACACTTAGAAGTCACAGGCTAATGGGAGGAGCAAATCTAGAG
Seq C2 exon
GCTCTAGAGGGAAATATTATGCTAGCACTGCCGTATGATAATAATGGCCTGAGGGTTATTAGTTCAGACCTAAACTTATTACTAGAGATTCCAAAACTCAACGCCTATGTACTATTTGGAGTCTCTGGCTTCAGCATCAACCTGCCATTCCAGTATTTTGGAAAAAACACAGAAGGCCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994-'18-21,'18-19,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(51.6=96.4)
C2:
PF0009420=VWD=FE(39.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACACCACCACAACCAA
R:
ATGCTGAAGCCAGAGACTCCA
Band lengths:
308-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]