HsaEX7005752 @ hg38
Exon Skipping
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1193485-1194670:+
Coord C1 exon
chr11:1193485-1193659
Coord A exon
chr11:1194110-1194360
Coord C2 exon
chr11:1194487-1194670
Length
251 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTGGGGCCTGGCAGGTG
3' ss Score
7.34
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
AAAGGTGAGACCTGGGCCACACCCAACTGCTCCGAGGCCACCTGTGAGGGCAACAACGTCATCTCCCTGCGCCCGCGCACGTGCCCGAGGGTGGAGAAGCCCACTTGTGCCAACGGCTACCCGGCTGTGAAGGTGGCTGACCAAGATGGCTGCTGCCATCACTACCAGTGCCAGT
Seq A exon
GTGTGTGCAGCGGCTGGGGTGACCCCCACTACATCACCTTCGACGGCACCTACTACACCTTCCTGGACAACTGCACGTACGTGCTGGTGCAGCAGATTGTGCCCGTGTATGGCCACTTCCGCGTGCTCGTCGACAACTACTTCTGCGGTGCGGAGGACGGGCTCTCCTGCCCGAGGTCCATCATCCTGGAGTACCACCAGGACCGCGTGGTGCTGACCCGCAAGCCAGTCCACGGGGTGATGACAAACGAG
Seq C2 exon
ATCATCTTCAACAACAAGGTGGTCAGCCCCGGCTTCCGGAAAAACGGCATCGTGGTCTCGCGCATCGGCGTCAAGATGTACGCGACCATCCCGGAGCTGGGAGTCCAGGTCATGTTCTCCGGCCTCATCTTCTCCGTGGAGGTGCCCTTCAGCAAGTTTGCCAACAACACCGAGGGCCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182-'33-43,'33-42,36-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.6=96.4)
C2:
PF0009420=VWD=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGGCAACAACGTCATCT
R:
CCTCGGTGTTGTTGGCAAACT
Band lengths:
307-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains