GgaEX1001598 @ galGal3
Exon Skipping
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15968845-15970046:-
Coord C1 exon
chr5:15969805-15970046
Coord A exon
chr5:15969290-15969467
Coord C2 exon
chr5:15968845-15969095
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCAATCTGTCAATAGTTT
3' ss Score
7.37
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGAAAATGTTTCTCTGCCAATGAATATATCAGGTCATTGTGCTTACTCCATTTGCAATGCATCATGCCAGATTGAATTAATCTGGGCAGAGTGTAAAGTTGTTCAAACTGAGGCCCTTGAGACCTGTGAACCAAACTCTGAAGCCTGTCCACCAACAGCTGCTCCCAATGCAACAAGCCTAGTTCCTGCTACTGCGCTGGCTCCTATGAGCGATTGTCTTGGGCTCATTCCTCCCAGAAAG
Seq A exon
TTTAATGAATCATGGGACTTTGGAAACTGCCAGATTGCCACTTGCCTGGGAGAAGAAAATAATATTAAGCTGTCCAGCATCACTTGCCCTCCTCAGCAGCTGAAACTCTGTGTCAATGGTTTCCCATTCATGAAACACCATGATGAAACTGGTTGCTGTGAAGTCTTTGAGTGCCAAT
Seq C2 exon
GTATTTGCAGTGGGTGGGGAAATGAGCATTATGTGACTTTCGATGGAACCTATTATCACTTCAAAGAAAACTGCACATATGTCCTTGTGGAGTTAATTCAGCCCAGCTCTGAAAAGTTCTGGATTCACATAGACAACTACTACTGTGGTGCCGCCGATGGAGCGATTTGTTCAATGTCCCTACTCATTTTTCACTCCAATTCTCTTGTTATTCTGACACAAGCGAAGGAACATGGAAAAGGAACAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717-'31-31,'31-30,32-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCCTGTCCACCAACAG
R:
GCGGCACCACAGTAGTAGTTG
Band lengths:
258-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]