DreEX6102018 @ danRer10
Exon Skipping
Gene
ENSDARG00000096975 | si:dkeyp-93a5.3
Description
si:dkeyp-93a5.3 [Source:ZFIN;Acc:ZDB-GENE-131127-100]
Coordinates
chr25:18647246-18648093:-
Coord C1 exon
chr25:18648073-18648093
Coord A exon
chr25:18647794-18647962
Coord C2 exon
chr25:18647246-18647693
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTGATAATCTCTCTCTCAGTAT
3' ss Score
7.17
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
ATTCACTTTCTAATTTGCAAG
Seq A exon
TATGTGGACGTCCAAACCCCACATTAAATCCTCGCATTGTGGGTGGTGTGAATGCAACTCATGGCGCGTGGCCGTGGATGGTCAGTCTGCAGGGCAGATATGGCCATTTTTGTGGCGGCTCCCTCATCAACAATCAATGGGTGCTGACAGCAGCTCACTGCATTGTTGA
Seq C2 exon
TCAAACCCCATCCAGCATAATTGTGTACTTAGGAAAGTGGAGAAGTTATGTAGCTGATGTCAATTCAATCTCCAGAACTATCAGACACATCATTCCCCATCCCTCCTACAGTAACATAACTAAAGATAATGACATCGCTCTGCTGCAGCTGACATCTACAGTCCAATATACTGACTACATTAAACCCATATGTCTAGCAGATGAAAACAGCAACTTCCCTCGTGGCACCAACAGCTGGGTCGCAGGCTGGGGGGATATTGGAGTTTTGGGCACAGGTGGTATAAGAGGCAGAACCACAGTGTCTGTGCCTTTACCTCATCCTGGCATTCTGCAAGAGGCTGAGCTTAAAGTGTACAGTAATGCAGACTGCAATAATATTTGTCATGGACGGATCACCCCCAACATGATTTGTGCTGGTACACGTCCTGGAGGCAAAGCAACCTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096975-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.4=77.2)
C2:
PF0008921=Trypsin=FE(62.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]