GgaEX6025860 @ galGal4
Exon Skipping
Gene
ENSGALG00000007406 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr24:5437153-5437951:+
Coord C1 exon
chr24:5437153-5437193
Coord A exon
chr24:5437529-5437688
Coord C2 exon
chr24:5437785-5437951
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCATCCCCGCTGAAGGCT
3' ss Score
4.1
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAGTGCCTCTCTGGATCGGTTGTTTCCCTCCTTTGTTCCA
Seq A exon
GCTGCGGGGAGAGCGTGCGGACGCCGCGTGTGCTGGGCGGGCGGCCGGCGGCCATCGAGGCCTGGCCATGGCAGGTCAGCCTGCGTTACCGCGGGGAGCACATCTGCGGCGGCAGCATCATCGATCCCCTCTGGATCCTCACTGCCGCGCACTGCTTCAG
Seq C2 exon
GAACAACCCCATCATCCCCAGCTGGCGCGTGAAGGCCGGCTCCGATGTCCTCTCTGGCCCTGCCAACCTTGCCGTGGAGAAGGTCTTCCTGGCCGAGGGGACGCCCACGTCTCCCAACAACAATGACATAGCGCTGGTGAAGCTACAGATCCCTCTGCATATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'6-10,'6-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.1=100)
A:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.3=79.6)
C2:
PF0008921=Trypsin=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCCTCTCTGGATCGGT
R:
TATGCAGAGGGATCTGTAGCTTCA
Band lengths:
202-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]