MmuEX6075965 @ mm9
Exon Skipping
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25503486-25504256:+
Coord C1 exon
chr17:25503486-25503566
Coord A exon
chr17:25503705-25503870
Coord C2 exon
chr17:25503991-25504256
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTGTCTCTCTCCAGGCC
3' ss Score
12.05
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ACTGCTTCCAGATGCTGAAGCGGCTGCTGCTGCTGCTGTGGGCACTGTCCCTCCTGGCTAGTCTGGTGTACTCGGCCCCTC
Seq A exon
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGAGTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTAAACTACTGGATACATTTCTGCGGAGGTTCTCTCATCCATCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACC
Seq C2 exon
GCACATCAAAAGCCCACAGCTCTTCCGGGTGCAGCTTCGTGAGCAGTATCTATACTATGGGGACCAGCTCCTCTCTTTGAACAGGATCGTGGTGCACCCCCACTATTACACGGCCGAGGGTGGGGCAGACGTTGCCCTGCTGGAGCTTGAGGTCCCTGTGAATGTCTCTACCCATCTCCACCCCATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCCCAGGGACATCGTGCTGGGTGACAGGCTGGGGCGACATTGATAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.8=83.9)
C2:
PF0008921=Trypsin=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTTCCAGATGCTGAAGC
R:
TTCACAGGGACCTCAAGCTCC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: