MmuEX6075965 @ mm10
Exon Skipping
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25366550-25367311:+
Coord C1 exon
chr17:25366550-25366621
Coord A exon
chr17:25366760-25366810
Coord C2 exon
chr17:25367046-25367311
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTGTCTCTCTCCAGGCC
3' ss Score
12.05
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGATGCTGAAGCGGCTGCTGCTGCTGCTGTGGGCACTGTCCCTCCTGGCTAGTCTGGTGTACTCGGCCCCTC
Seq A exon
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGA
Seq C2 exon
GCACATCAAAAGCCCACAGCTCTTCCGGGTGCAGCTTCGTGAGCAGTATCTATACTATGGGGACCAGCTCCTCTCTTTGAACAGGATCGTGGTGCACCCCCACTATTACACGGCCGAGGGTGGGGCAGACGTTGCCCTGCTGGAGCTTGAGGTCCCTGTGAATGTCTCTACCCATCTCCACCCCATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCCCAGGGACATCGTGCTGGGTGACAGGCTGGGGCGACATTGATAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825-'0-1,'0-0,1-1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.8=83.9)
C2:
PF0008921=Trypsin=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAGTCTGGTGTACTCGG
R:
CGTGTAATAGTGGGGGTGCAC
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types