GgaEX6027665 @ galGal4
Exon Skipping
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:618354-620025:+
Coord C1 exon
chr28:618354-618509
Coord A exon
chr28:619380-619551
Coord C2 exon
chr28:619751-620025
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCATCTCTTACAGACT
3' ss Score
10.67
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTCTGCAGAAGACACGAGTGACCCGAGCCTTGTTGTCCCCAGGGAGCTGCCCTGGTGACATGTTCATGTGCCACAACACGCAGTGCGTGTGGAAAGAAAACCCTGAATGTGACGGCCAGAAGGACTGCGCCGACGCCTCTGATGAAAAGGGCTGCG
Seq A exon
ACTGTGGGAGCCGCCCTGCCATGCAGACTGCCAGCAGGATAGTCGGAGGCACAGAGGCATCCAGAGGGGAGTTCCCCTGGCAGGTCAGCCTGCGAGAGAACAACGAGCATTTCTGTGGTGCTGCAATCCTCACGGAGAAGTGGCTGGTGTCTGCTGCTCACTGCTTTACCGA
Seq C2 exon
GTTCCAGGACCCGGCCATGTGGGCAGCGTACGCAGGGACCACCTCCATCAGTGGTGCAGACAGCAGTGCAGTGAAAATGGGCATCGCCCGGATCATCCCTCACCCCTCCTACAACACTGACACGGCCGACTACGACGTGGCCGTGCTGGAGCTGAAGAGACCCGTGACCTTCACTAAGTACATCCAGCCCGTGTGCCTGCCACATGCTGGGCATCACTTCCCTACCAACAAGAAGTGCCTGATCTCTGGCTGGGGATACCTCAAGGAGGATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458-'5-11,'5-9,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=71.7)
A:
PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGCCTCTGATGAAAAGGG
R:
TTGGTAGGGAAGTGATGCCCA
Band lengths:
254-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]