DreEX6097825 @ danRer10
Exon Skipping
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10730779-10732464:+
Coord C1 exon
chr22:10730779-10730892
Coord A exon
chr22:10731938-10732103
Coord C2 exon
chr22:10732190-10732464
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAACAGTTGTTTCAATGTAGCGT
3' ss Score
4.72
5' ss Seq
AGTGTAAAG
5' ss Score
-2.9
Exon sequences
Seq C1 exon
GTAAATGTCCTGATAGCACGTTTACCTGTGACAATGGCGAGTGCATCACAAAGCCAAATCCCGAATGTGACTACATAACGGACTGCACTGATGGTTCAGATGAAACCTTTTGCT
Seq A exon
CGTGTGGAACTCGTCCAGTCATGTCTAACCGTATTGTGGGAGGTGAAAACACCCGGCACGGGGAGTTCCCTTGGCAGGTCAGTCTCAGACTACGTGGCCGCCATACCTGTGGAGCATCCATCGTCAACAGCCGCTGGCTCGTCAGCGCCGCCCATTGTTTTGAAGT
Seq C2 exon
AGAAAACAACCCAAAAGACTGGACAGCTCTTGTGGGTGCCAACCAAGTCAGCGGTGCGGAGGCTGAAGCCTTCATAGTAAACATCAAGTCCCTGGTTATGTCTCCAAAATACGACCCCATGACCACTGACAGTGATGTGACCGTACTGGAGCTGGAAACACCCTTGAAGTTCAGCCATTACGTTCAGCCAGTCTGTATACCATCATCCTCTCATGTTTTCACTCCTGGGCAGAACTGCATAGTATCTGGTTGGGGAGCTCTTAATCAGTACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.011
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=100.0)
A:
PF0005713=Ldl_recept_a=PD(2.5=1.8),PF0008921=Trypsin=PU(19.0=78.6)
C2:
PF0008921=Trypsin=FE(39.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGGCGAGTGCATCACAA
R:
GTGTTTCCAGCTCCAGTACGG
Band lengths:
245-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]