HsaEX6091727 @ hg38
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2403082-2408630:+
Coord C1 exon
chr19:2403082-2403195
Coord A exon
chr19:2405374-2405545
Coord C2 exon
chr19:2408356-2408630
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGTGACCTGCTGTCTTGCAGAGT
3' ss Score
7.67
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
GCCGCTGTCCAGGGAACTCCTTTTCCTGCGGGAACAGCCAGTGTGTGACCAAGGTGAACCCGGAGTGTGACGACCAGGAGGACTGCTCCGATGGGTCCGACGAGGCGCACTGCG
Seq A exon
AGTGTGGCTTGCAGCCTGCCTGGAGGATGGCCGGCAGGATCGTGGGCGGCATGGAAGCATCCCCGGGGGAGTTTCCGTGGCAAGCCAGCCTTCGAGAGAACAAGGAGCACTTCTGTGGGGCCGCCATCATCAACGCCAGGTGGCTGGTGTCTGCTGCTCACTGCTTCAATGA
Seq C2 exon
GTTCCAAGACCCGACGAAGTGGGTGGCCTACGTGGGTGCGACCTACCTCAGCGGCTCGGAGGCCAGCACCGTGCGGGCCCAGGTGGTCCAGATCGTCAAGCACCCCCTGTACAACGCGGACACGGCCGACTTTGACGTGGCTGTGCTGGAGCTGACCAGCCCTCTGCCTTTCGGCCGGCACATCCAGCCCGTGTGCCTCCCGGCTGCCACACACATCTTCCCACCCAGCAAGAAGTGCCTGATCTCAGGCTGGGGCTACCTCAAGGAGGACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-'11-12,'11-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGAACTCCTTTTCCTGC
R:
AGCACAGCCACGTCAAAGTC
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains