RnoEX6030441 @ rn6
Exon Skipping
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11690020-11692534:-
Coord C1 exon
chr7:11692421-11692534
Coord A exon
chr7:11691357-11691528
Coord C2 exon
chr7:11690020-11690294
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGTGATCCCGTGTCTTGCAGACT
3' ss Score
7.52
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GCCACTGCCCCGGGAATGCCTTCTCCTGTCAGAACAGTCAATGCGTGAGCAAAGAAAACCCGGAGTGTGACGACAGAGTGGACTGCTCTGATGGGTCTGACGAGGCTCAGTGTG
Seq A exon
ACTGCGGCTGGCAGCCTGCCTGGAGATCAGCTGGAAGGATCGTGGGCGGAGCGGAGGCGGCTCCGGGAGAGTTCCCCTGGCAGGTCAGCCTCCGAGAGAATCACGAACACTTCTGCGGCGCCACCATCATCGGTGCCCGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
Seq C2 exon
ATTCCAGGACCCTGCGCAATGGGCCGCCCAGGCAGGCAGCGTGCACCTGAGCGGTTCAGAGGCCAGCGCTGTGCGTGCGCGCGTGCTCCGTATCGCCAAGCATCCTGCCTACAACGCGGACACGGCGGACTTTGACGTGGCGGTGCTGGAACTGGCTCGCCCGCTGCCCTTCGGCCGCTATGTGCAGCCTGCCTGCCTTCCCGCGGCCACTCACGTCTTCCCACCGCGCAAGAAGTGCCTGATCTCGGGCTGGGGTTACCTGAAGGAGGACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429-'6-9,'6-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGCCTTCTCCTGTCAG
R:
CACCGCCACGTCAAAGTCC
Band lengths:
248-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]