MmuEX6049981 @ mm10
Exon Skipping
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80886066-80888560:+
Coord C1 exon
chr10:80886066-80886179
Coord A exon
chr10:80887384-80887555
Coord C2 exon
chr10:80888286-80888560
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGTGATCCTGTGTCTTGCAGACT
3' ss Score
8.04
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GCCACTGCCCCGGGAATGTCTTCTCCTGTCAGAATGGTCAGTGCGTGAGCAAAGAGAACCCGGAGTGTGATGACAGAGTGGACTGCTCCGACGAGTCTGATGAGGCTCAGTGCG
Seq A exon
ACTGCGGCTGGCAGCCTGCCTGGAGGTCAGCTGGCAGGATCGTGGGAGGAGTGGAGGCGGCTCCCGGGGAGTTCCCCTGGCAGGTCAGTCTTCGAGAGAATCACGAACACTTCTGTGGCGCCACCATCATCGGTGCCAGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
Seq C2 exon
ATTCCAGGACCCTGCGCAGTGGGCCGCCCAGGCGGGCAGTGTGCACCTGAGCGGGTCAGAGGCCAGCGCTGTGCGCACACGCGTGCTCCGCATAGCCAAGCATCCTGCCTATGATGCGGACACAGCGGACTTCGACGTGGCGGTGCTGGAGCTGGCGCGCCCGCTGCCCTTCGGACGCTATGTGCAGCCTGCCTGCCTCCCCGCGGCCACGCACGTCTTCCCGCCGGGCAAGAAGTGTCTGATCTCGGGCTGGGGTTACCTGAAAGAGGACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-'6-14,'6-12,9-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGGAATGTCTTCTCCTGT
R:
CGTCGAAGTCCGCTGTGTC
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types