BtaEX0037186 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22470376-22476943:-
Coord C1 exon
chr7:22476830-22476943
Coord A exon
chr7:22474928-22475099
Coord C2 exon
chr7:22470376-22470650
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGGTGATCTCTGTCTTGCAGACT
3' ss Score
9.16
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GCCACTGTCCAGGGAATGTCTTTTCCTGCGGGAACAGCCAGTGTGTGACCAAGGTGAACCCAGAGTGTGATGACACCGCGGACTGCTCCGACGGCTCCGACGAGGCCCACTGCG
Seq A exon
ACTGTGGCTTGCAGCCTGGCTGGAAGACAGCTGGCAGGATTGTGGGTGGTGTGGAAGCGTCCCCAGGGGAGTTCCCTTGGCAAGTCAGCCTCCGTGAAAACAACGAGCACTTCTGTGGGGCCGCCATCATCAGCGCCAGGTGGCTGGTGTCCGCTGCCCACTGCTTCAACGA
Seq C2 exon
ATTCCAGGACTCCCCGGAGTGGGTGGCTTACGTGGGCACCACCTACCTCAGCGGCTCAGAGGCCAGCATGGTGCGGGCCCGCGTGGCCCGGATCATCACACACCCATCCTACAACTCGGACACAGCTGACTTCGACGTGGCGGTGCTGGAGCTGGGCAGACCCCTGCCCTTCAGCCGGCACGTGCAGCCCGTGTGCCTGCCGGCTGCCTCACACATCTTCCCACCAAGGAAGAAGTGCCTCATCTCAGGCTGGGGCTACCTCAAGGAGAACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAATGTCTTTTCCTGCGG
R:
CACGTCGAAGTCAGCTGTGTC
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development