DreINT0000009 @ danRer10
Intron Retention
Gene
ENSDARG00000008835 | A2ML1 (1 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3655191-3655620:-
Coord C1 exon
chr3:3655395-3655620
Coord A exon
chr3:3655315-3655394
Coord C2 exon
chr3:3655191-3655314
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
3' ss Seq
ATGCTGTTATTCTTTGTCAGGTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GGACTCTGGGTCCAGCTCAGTTCCCCTCACAGTTCCTGATACGATCACCACATGGGACACTGAAGCCTTCTGTCTGTCCTCCAGTGGTTTTGGTTTGGCTCTACCAGTTCTGCTGACTTCCTTCCAGCCCTTCTTCCTGGAGCTTACCCTGCCTTACTCCATAATCCGTGGGGAGTTTTTTGAACTGAAGGCCACAGTGTTCAACTATCTGTCCCAATGCATCAAG
Seq A exon
GTCTGGGTTCATTAGTGTTGCCCTATTCCACATATCATGTATCTGCTTTAATGTCCACTAATGCTGTTATTCTTTGTCAG
Seq C2 exon
GTTCAAGTAACTCCAACACCATCCTCCAACTTCACTCTTAAATCTCTTGATGATCAGGATTCATCCACTATCTCTGCCAATGGGAGAAAGACCTTCAAATGGGCTTTAACTGCTTCTGTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008835:ENSDART00000021286:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.3=100)
A:
NA
C2:
PF0020717=A2M=PD(5.6=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTACCCTGCCTTACTCCA
R:
GGTCTTTCTCCCATTGGCAGA
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]