DreINT0000054 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21069002-21069460:-
Coord C1 exon
chr15:21069342-21069460
Coord A exon
chr15:21069228-21069341
Coord C2 exon
chr15:21069002-21069227
Length
114 bp
Sequences
Splice sites
5' ss Seq
GGGGTTTGT
5' ss Score
1.06
3' ss Seq
AAATAGTTTCTGATTTTTAGAGA
3' ss Score
3.57
Exon sequences
Seq C1 exon
GATTTTGTAGTAAAAATGGCAATGAACTATGAAGAAGACAGCTTTGCTGTTAATTCTCCTGATGCAACCATTCGAACCGTTTTTCCAGAGACATGGATCTGGCAGCTTGCTGAAGTGGG
Seq A exon
GTTTGTCATTCAACCTTTTTTATATTTTAACTCAGAAAAAATGGCTTCAGCGTTTGACAGCATTGCATTTTATGTTTATATTCATAATCTACAAAAATAGTTTCTGATTTTTAG
Seq C2 exon
AGACTCTGGATCAGCTGAGGTTCCTGTCACAGTTCCTGACACTATCACGACTTGGGAGATGGACGCCTTCTGTCTGTCCTCCACAGGTCTGGGTTTGGCTCCTCCTGCTCAGCTGACAGTTTTCCAGCCCTTCTTCCTGGAGCTCTCTCTACCTTACTCCATCATCCGTGGAGAGATCTTTGAGCTCAAGGCCACTGTCTTCAACTATCTGTCCAAGTGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(10.0=22.5)
A:
NA
C2:
PF0020717=A2M=FE(83.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAACCATTCGAACCGT
R:
ACAGTGGCCTTGAGCTCAAAG
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]