GgaINT1001725 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75726382-75726957:-
Coord C1 exon
chr1:75726895-75726957
Coord A exon
chr1:75726611-75726894
Coord C2 exon
chr1:75726382-75726610
Length
284 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTTGCTCTGTCCCTCACCAGCTC
3' ss Score
8.88
Exon sequences
Seq C1 exon
TCCCATGGAGACCATCCGGAAGTACTTCCCTGAGACATGGATTTGGGACATAGTTTCAGTGAA
Seq A exon
GTAAGTGTTTATGGGAATTGGGGCAAAATCTCAGAAGATAGTTAAGCTTCAGTAAAAGTGTCAATACTTAGATGAGGGAATATTTTTAGTAGACAGAGGGATTGTTCAAGGATGCTAAGTACATGATGTTTTGGAAGGACATGAAAAAAGCCAGTGCCCTTATCCCAGCTGGTCAGGAATTTGCTGTCAGTAATTGTTGTTCATTAGGCTGAGGGAAAAAAAAAAAAAAAAAAAAAAAGATTATCTCCAGAATATGACTGAAAACTTGCTCTGTCCCTCACCAG
Seq C2 exon
CTCTGAGGGAAACGCTGAACTAGATGTGACCATCCCTGACACCATCACTGAATGGAAAGCCAGTGCATTCTGCATGTCCCCAGACACAGGCTTTGGCCTGTCACCAACAGTGTCCCTCAGAGCCTTCCAGCCTTTCTTTGTAGAGCTCACCCTGCCTTATTCTGTAGTGCGTGGTGAGGCCTTCACGCTGAAAGCTACTGTTTTCAACTACCTGACAGCCTGCATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=40.9)
A:
NA
C2:
PF0020717=A2M=FE(83.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCATCCGGAAGTACTTC
R:
TCTGATGCAGGCTGTCAGGTA
Band lengths:
286-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]