DreINT0000058 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21060392-21061036:-
Coord C1 exon
chr15:21060957-21061036
Coord A exon
chr15:21060569-21060956
Coord C2 exon
chr15:21060392-21060568
Length
388 bp
Sequences
Splice sites
5' ss Seq
TCGGTACAT
5' ss Score
4.33
3' ss Seq
AACTTCCTTTTTTTTTTTAGGCG
3' ss Score
9.49
Exon sequences
Seq C1 exon
CAGAGTCTCGGATGAGGTGACACTGACACTTCCTTCCGATGTGATAAAAGGATCAGTCAGATCTTCTGTTTCAGTACTCG
Seq A exon
GTACATTTGTTTATAAATCTAAAAAAGCTAAACTGATATTGTATGATGTTACATTATATAATTTTTTAGCTGAGAATAAAAAACTGTGCAGAATAAACTCTCTGAGTACAAATAGGATTTGGCTTGAATTATGAATTATGCAAAACAATAAGATGTGTACAGTAATGTTACAAATTAGTAATGAAACGTATAGATTCATTTTATCAAATTAAATTTATATGTTATGAAAATTGGGTCTTAAACATCTTCCAGAATGTAGCAACGTACTTCTTTAAAATGAATATTTTTCAAAATAATTTTTGTCTGAAATTAACATTTGTGTTTTAAAAATTGGCTCAATTTCTGCTGAATGCAAAAATATGCATTGAAACTTCCTTTTTTTTTTTAG
Seq C2 exon
GCGATATATTGGGTCGTGCACTGCAGAATCTTCATGGATTATTAAAAATGCCTTACGGCTGTGGAGAGCAAAATATTGCTGTTCTTTCTCCCAATATTTACATTCTGCAGTATCTGGAGAACACAAAGCAGCTCACATCAGCCATCCGAGAGAAAGCCAGCGGCTTCCTTAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCGGATGAGGTGACACT
R:
CACTCTTAAGGAAGCCGCTGG
Band lengths:
254-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]