DreINT0000061 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21059818-21060149:-
Coord C1 exon
chr15:21059993-21060149
Coord A exon
chr15:21059893-21059992
Coord C2 exon
chr15:21059818-21059892
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TTCTTTGTCCTCTGTCATAGGGT
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTTGACTGCTTTTGTCCTGAGGTCTTTTGACAAAGCACAGAGGTACATATTTGTTGATCCACAAATTATTCAGAGTGCAAAGGATTGGTTAATAAGCAGACGGGATTCAGATGGATGTTTTATCCAGCAGGGAAGACTGTTTAACAGTCGAATGAAG
Seq A exon
GTTTGCAATTAGTTCCTTTTAACCAGATAATCTATGTTGTAATCAGAAGTATTTTTGTATTATCTTGTGTTGTTTTGTTATTCTTTGTCCTCTGTCATAG
Seq C2 exon
GGTGGAGTGAATGATAAGGTGACCATGACGGCCTACATTACTGCATCACTGCTAGAGCTGGAAACTCCTGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.9=100)
A:
NA
C2:
PF076789=A2M_comp=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGCTTTTGTCCTGAGGT
R:
TGTGACAGGAGTTTCCAGCTC
Band lengths:
230-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]