BtaINT0007459 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101257958-101258573:+
Coord C1 exon
chr5:101257958-101258114
Coord A exon
chr5:101258115-101258498
Coord C2 exon
chr5:101258499-101258573
Length
384 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
CTCTGCCTCTGATCCTACAGGGT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GCTTACTGCATTTGTGCTCAAGTCTTTTTCTCAAGCCCAGTCACACATCTTTGTGGAGGACTCGCACATCACAGACTCCCTTACCTGGCTCTCACGGAAGCAGAAGGAAAATGGTTGTTTCCAGCGCTCTGGATCATTGCTAAACAATGCTATTAAG
Seq A exon
GTGATGCCTTTAAATTTGTTCTGGTCCCTGAGAAGAGTGAAATGTATGAGTTGTGATGCTCCTATGGATTCCTCAAGTCCTGGTGATATAACTTTGAGAAGGACAGCAGAAGCAAAAGCTTTTGAAACCTAACGATAAATTAGGTGTTTCTTATGGTTAAGAAAATAGCATGTCCAAAAAACTCCACTATGTCACTAAAAATGAGGGAAAGTTATTTGGGACAGATTTCAGAATTTGGGGGTGAAGGAGGAAGCAGAGGAAACAATAATATTGCCCTAGAAAAGATACATTCTGGTGAAGATTAACCAAGGGGGAAGTTAGAGTTAGCTGACTCTGGGTGATGGCTACTGGAGTGTTTGAGTGTCTCTGCCTCTGATCCTACAG
Seq C2 exon
GGTGGGGTCGATGATGAGGTAACGCTCTCTGCCTATATCACCATCGCTCTACTGGAGATGCCGCTGCTTGTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACTGCATTTGTGCTCAAGT
R:
GTGACAAGCAGCGGCATCTC
Band lengths:
231-615
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]