GgaINT0112595 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79426394-79427128:-
Coord C1 exon
chr1:79426972-79427128
Coord A exon
chr1:79426469-79426971
Coord C2 exon
chr1:79426394-79426468
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
TCTCTCCATATCCTCTTCAGGGA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GCTCACTGCCTTTGTGTACAAATCATTTGCAGAAGCTAGTCGCTTCATATATATTGATGACAATGTCCAGGCTCAAACCCTGATATGGCTGGCAAGAAAACAGAAGACAGATGGCTGCTTCCAAAGTACTGGGATACTTGTCAACAATGCCATGAAG
Seq A exon
GTGGTAAAGAATTACTTTTGTTAAATGTATGCTATTATCATTAAGATCTTCTCTCATTACCTCTCATACCAAAACCTATACTTTCTTCTAAATGCCTCTCCTCTGCCAAGAGATACCTCTCCACACCTTACAGTAACTATTTCCAGAACAGTCAGCTTCCTCACTCTCTTTTACGTATCTTGCACACCTGCAAGAGGATTACAAGACAATAGCCTTGAGGGAATTCGTATTTTTTGAGGATTTTGTATTGCTTCTGATGGTAGTTGGTTGGCTGTTGTTGATGAGGATTTTGTATTTCTTTTTGTATTGCTTTTTTATTTTTTGTTTAAATAATAATGAACTTTTCTTAGCTTATAAGCTATCTCTGCTATGTATGTACTCTCCTTCATTTTGGGCTGCCTGCAGAAACAGCCACAATCTTCAACTGGGATATGGCAACTCATATTTGAAAGCTTTTCATTCATTCTATTCACTGATAATTCCTCTCTCCATATCCTCTTCAG
Seq C2 exon
GGAGGAGTAGAAAATGAGCTGTCACTTTCTGCCTATATCACCATTGCCTTGCTAGAAGCTGGGCACTCCGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.0=100)
A:
NA
C2:
PF076789=A2M_comp=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTGCCTTTGTGTACAA
R:
ACGGAGTGCCCAGCTTCTAG
Band lengths:
228-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]