GgaINT0112595 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75783910-75784644:-
Coord C1 exon
chr1:75784488-75784644
Coord A exon
chr1:75783985-75784487
Coord C2 exon
chr1:75783910-75783984
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
TCTCTCCATATCCTCTTCAGGGA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GCTCACTGCCTTTGTGTACAAATCATTTGCAGAAGCTAGTCGCTTCATATATATTGATGACAATGTCCAGGCTCAAACCCTGATATGGCTGGCAAGAAAACAGAAGACAGATGGCTGCTTCCAAAGTACTGGGATACTTGTCAACAATGCCATGAAG
Seq A exon
GTGGTAAAGAATTACTTTTGTTAAATGTATGCTATTATCATTAAGATCTTCTCTCATTACCTCTCATACCAAAACCTATACTTTCTTCTAAATGCCTCTCCTCTGCCAAGAGATACCTCTCCACACCTTACAGTAACTATTTCCAGAACAGTCAGCTTCCTCACTCTCTTTTACGTATCTTGCACACCTGCAAGAGGATTACAAGACAATAGCCTTGAGGGAATTCGTATTTTTTGAGGATTTTGTATTGCTTCTGATGGTAGTTGGTTGGCTGTTGTTGATGAGGATTTTGTATTTCTTTTTGTATTGCTTTTTTATTTTTTGTTTAAATAATAATGAACTTTTCTTAGCTTATAAGCTATCTCTGCTATGTATGTACTCTCCTTCATTTTGGGCTGCCTGCAGAAACAGCCACAATCTTCAACTGGGATATGGCAACTCATATTTGAAAGCTTTTCATTCATTCTATTCACTGATAATTCCTCTCTCCATATCCTCTTCAG
Seq C2 exon
GGAGGAGTAGAAAATGAGCTGTCACTTTCTGCCTATATCACCATTGCCTTGCTAGAAGCTGGGCACTCCATGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.0=100)
A:
NA
C2:
PF076789=A2M_comp=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTGCCTTTGTGTACAA
R:
TGGAGTGCCCAGCTTCTAGC
Band lengths:
227-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]